Author: David (Page 4 of 24)

From my experience, some environments necessitate leveraging multiple NICs on Kubernetes worker nodes as well as the underlying Pods. Because of this, I wanted to create a test environment to experiment with this kind of setup. Although more common in bare metal environments, I’ll create a virtualised equivalent.

Planning

This is what I have in mind:

In RKE2 vernacular, we refer to nodes that assume etcd and/or control plane roles as servers, and worker nodes as agents.

Server Nodes

Server nodes will not run any workloads. Therefore, they only require 1 NIC. This will reside on VLAN40 in my environment and will act as the overlay/management network for my cluster and will be used for node <-> node communication.

Agent Nodes

Agent nodes will be connected to multiple networks:

• VLAN40 – Used for node <-> node communication.
• VLAN50 – Used exclusively by Longhorn for replication traffic. Longhorn is a cloud-native distributed block storage solution for Kubernetes.
• VLAN60 – Provide access to ancillary services.

Creating Nodes

For the purposes of experimenting, I will create my VMs first.

Server VM config:

Agent VM Config:

Rancher Cluster Configuration

Using Multus is as simple as selecting it from the dropdown list of CNI’s. We have to have an existing CNI for cluster networking, which is Canal in this example

The section “Add-On Config” enables us to make changes to the various addons for our cluster:

This cluster has the following tweaks:

calico:
  ipAutoDetectionMethod: interface=ens192

flannel:
  backend: host-gw
  iface: ens192

The Canal CNI is a combination of both Calico and Flannel. Which is why the specific interface used is defined in both sections.

With this set, we can extract the join command and run it on our servers:

Tip – Store the desired node-ip in a config file before launching the command on the nodes. Ie:

packerbuilt@mullti-homed-wrk-1:/$ cat /etc/rancher/rke2/config.yaml
node-ip: 172.16.40.47

NAME                 STATUS   ROLES                       AGE   VERSION          INTERNAL-IP    EXTERNAL-IP   OS-IMAGE             KERNEL-VERSION      CONTAINER-RUNTIME
multi-homed-cpl-1   Ready    control-plane,etcd,master   42h   v1.25.9+rke2r1   172.16.40.46   <none>        Ubuntu 22.04.1 LTS   5.15.0-71-generic   containerd://1.6.19-k3s1
multi-homed-cpl-2   Ready    control-plane,etcd,master   41h   v1.25.9+rke2r1   172.16.40.49   <none>        Ubuntu 22.04.1 LTS   5.15.0-71-generic   containerd://1.6.19-k3s1
multi-homed-cpl-3   Ready    control-plane,etcd,master   41h   v1.25.9+rke2r1   172.16.40.50   <none>        Ubuntu 22.04.1 LTS   5.15.0-71-generic   containerd://1.6.19-k3s1
multi-homed-wrk-1   Ready    worker                      42h   v1.25.9+rke2r1   172.16.40.47   <none>        Ubuntu 22.04.1 LTS   5.15.0-71-generic   containerd://1.6.19-k3s1
multi-homed-wrk-2   Ready    worker                      42h   v1.25.9+rke2r1   172.16.40.48   <none>        Ubuntu 22.04.1 LTS   5.15.0-71-generic   containerd://1.6.19-k3s1
multi-homed-wrk-3   Ready    worker                      25h   v1.25.9+rke2r1   172.16.40.51   <none>        Ubuntu 22.04.1 LTS   5.15.0-71-generic   containerd://1.6.19-k3s1

Pod Networking

Multus is not a CNI in itself, but a meta CNI plugin, enabling the use of multiple CNI’s in a Kubernetes cluster. At this point we have a functioning cluster with an overlay network in place for cluster communication, and every Pod will have a interface on that network. So which other CNI’s can we use?

Out of the box, we can query the /opt/cni/bin directory for available plugins. You can also add additional CNI’s if you wish.

packerbuilt@mullti-homed-wrk-1:/$ ls /opt/cni/bin/
bandwidth  calico       dhcp      flannel      host-local  ipvlan    macvlan  portmap  sbr     tuning  vrf
bridge     calico-ipam  firewall  host-device  install     loopback  multus   ptp      static  vlan

For this environment, macvlan will be used. It provides MAC addresses directly to Pod interfaces which makes it simple to integrate with network services like DHCP.

Defining the Networks

Through NetworkAttachmentDefinition objects, we can define the respective networks and bridge them to named, physical interfaces on the host:

apiVersion: v1
kind: Namespace
metadata:
  name: multus-network-attachments
---
apiVersion: "k8s.cni.cncf.io/v1"
kind: NetworkAttachmentDefinition
metadata:
  name: macvlan-longhorn-dhcp
  namespace: multus-network-attachments
spec:
  config: '{
      "cniVersion": "0.3.0",
      "type": "macvlan",
      "master": "ens224",
      "mode": "bridge",
      "ipam": {
        "type": "dhcp"
      }
    }'
---
apiVersion: "k8s.cni.cncf.io/v1"
kind: NetworkAttachmentDefinition
metadata:
  name: macvlan-private-dhcp
  namespace: multus-network-attachments
spec:
  config: '{
      "cniVersion": "0.3.0",
      "type": "macvlan",
      "master": "ens256",
      "mode": "bridge",
      "ipam": {
        "type": "dhcp"
      }
    }'

We use an annotation to attach a pod to additional networks

apiVersion: v1
kind: Pod
metadata:
  name: net-tools
  namespace: multus-network-attachments
  annotations:
    k8s.v1.cni.cncf.io/networks: multus-network-attachments/macvlan-longhorn-dhcp,multus-network-attachments/macvlan-private-dhcp
spec:
  containers:
  - name: samplepod
    command: ["/bin/bash", "-c", "sleep 2000000000000"]
    image: ubuntu

Which we can validate within the pod:

root@net-tools:/# ip addr show
3: eth0@if2: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1450 qdisc noqueue state UP group default 
    link/ether 1a:57:1a:c1:bf:f3 brd ff:ff:ff:ff:ff:ff link-netnsid 0
    inet 10.42.5.27/32 scope global eth0
       valid_lft forever preferred_lft forever
    inet6 fe80::1857:1aff:fec1:bff3/64 scope link 
       valid_lft forever preferred_lft forever
4: net1@if4: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue state UP group default 
    link/ether aa:70:ab:b6:7a:86 brd ff:ff:ff:ff:ff:ff link-netnsid 0
    inet 172.16.50.40/24 brd 172.16.50.255 scope global net1
       valid_lft forever preferred_lft forever
    inet6 fe80::a870:abff:feb6:7a86/64 scope link 
       valid_lft forever preferred_lft forever
5: net2@if5: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue state UP group default 
    link/ether 62:a6:51:84:a9:30 brd ff:ff:ff:ff:ff:ff link-netnsid 0
    inet 172.16.60.30/24 brd 172.16.60.255 scope global net2
       valid_lft forever preferred_lft forever
    inet6 fe80::60a6:51ff:fe84:a930/64 scope link 
       valid_lft forever preferred_lft forever

root@net-tools:/# ip route
default via 169.254.1.1 dev eth0 
169.254.1.1 dev eth0 scope link 
172.16.50.0/24 dev net1 proto kernel scope link src 172.16.50.40 
172.16.60.0/24 dev net2 proto kernel scope link src 172.16.60.30

Testing access to a service on net2:

root@net-tools:/# curl 172.16.60.31
<!DOCTYPE html>
<html>
<head>
<title>Welcome to nginx!</title>

Configuring Longhorn

Longhorn has a config setting to define the network used for storage operations:

If setting this post-install, the instance-manager pods will restart and attach a new interface:

instance-manager-e-437ba600ca8a15720f049790071aac70:/ # ip addr show
1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default qlen 1000
    link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
    inet 127.0.0.1/8 scope host lo
       valid_lft forever preferred_lft forever
    inet6 ::1/128 scope host 
       valid_lft forever preferred_lft forever
3: eth0@if51: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1450 qdisc noqueue state UP group default 
    link/ether fe:da:f1:04:81:67 brd ff:ff:ff:ff:ff:ff link-netnsid 0
    inet 10.42.1.58/32 scope global eth0
       valid_lft forever preferred_lft forever
    inet6 fe80::fcda:f1ff:fe04:8167/64 scope link 
       valid_lft forever preferred_lft forever
4: lhnet1@if4: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue state UP group default 
    link/ether 12:90:50:15:04:c7 brd ff:ff:ff:ff:ff:ff link-netnsid 0
    inet 172.16.50.34/24 brd 172.16.50.255 scope global lhnet1
       valid_lft forever preferred_lft forever
    inet6 fe80::1090:50ff:fe15:4c7/64 scope link 
       valid_lft forever preferred_lft forever

This post outlines the necessary steps to leverage the Nvidia GPU operator in a K3s cluster. In this example, using a gift from me to my homelab, a cheap Nvidia T400 GPU which is on the supported list for the operator.

Step 1 – Configure Passthrough (If required)

For this environment, vSphere is used and therefore PCI Passthrough is required to present the GPU to the VM. The Nvidia GPU is represented as two devices – one for the video controller, and another for the audio controller – we only need the video controller. Steps after this are still relevant to bare metal deployments.

Step 2 – Create VM

When creating a VM, choose to add a PCI device, and specify the Nvidia GPU:

Step 3 – Install nvidia-container-runtime and K3s

In order for Containerd (within K3s) to pick up the Nvidia plugin when K3s starts, we need to install the corresponding container runtime:

root@ubuntu:~# curl -s -L https://nvidia.github.io/nvidia-container-runtime/gpgkey |   sudo apt-key add -
root@ubuntu:~# distribution=$(. /etc/os-release;echo $ID$VERSION_ID)
root@ubuntu:~# curl -s -L https://nvidia.github.io/nvidia-container-runtime/$distribution/nvidia-container-runtime.list |   sudo tee /etc/apt/sources.list.d/nvidia-container-runtime.list
root@ubuntu:~# apt update && apt install -y nvidia-container-runtime

root@ubuntu:~# curl -sfL https://get.k3s.io | INSTALL_K3S_VERSION="v1.23.7+k3s1" sh

We can validate the Containerd config includes the Nvidia plugin with:

root@ubuntu:~# cat /var/lib/rancher/k3s/agent/etc/containerd/config.toml | grep -i nvidia
[plugins.cri.containerd.runtimes."nvidia"]
[plugins.cri.containerd.runtimes."nvidia".options]
  BinaryName = "/usr/bin/nvidia-container-runtime"

Step 4 – Import Cluster into Rancher and install the nvidia-gpu-operator

Follow this guide to import an existing cluster in Rancher.

After which, Navigate to Rancher -> Cluster -> Apps -> Repositories -> Create

Add the Helm chart for the Nvidia GPU operator:

Select to install the GPU Operator chart by going to Cluster -> Apps -> Charts -> Search for "GPU":

Follow the instructions until you reach the Edit YAML section. At this point add the following configuration into the corresponding section; this is to cater to where K3s stores the Containerd config and socket endpoint:

toolkit:
  env:
    - name: CONTAINERD_CONFIG
      value: /var/lib/rancher/k3s/agent/etc/containerd/config.toml
    - name: CONTAINERD_SOCKET
      value: /run/k3s/containerd/containerd.sock

Proceed with the installation and wait for the corresponding Pods to spin up. This will take some time as it’s compiling the GPU/CUDA drivers on the fly.

Note: You will notice several GPU-Operator Pods initially in a crashloop state. This is expected until the nvidia-driver-daemonset Pod has finished building and installing the Nvidia drivers. You can follow the Pod logs to get more insight as to what’s occurring.

oot@ubuntu:~# kubectl logs nvidia-driver-daemonset-wmrxq
DRIVER_ARCH is x86_64
Creating directory NVIDIA-Linux-x86_64-515.65.01
Verifying archive integrity... OK
root@ubuntu:~# kubectl logs nvidia-driver-daemonset-wmrxq -f
DRIVER_ARCH is x86_64
Creating directory NVIDIA-Linux-x86_64-515.65.01
Verifying archive integrity... OK
Uncompressing NVIDIA Accelerated Graphics Driver for Linux-x86_64 515.65.01............................................................................................................................................

root@ubuntu:~# kubectl get po
NAME                                                              READY   STATUS            RESTARTS      AGE
nvidia-dcgm-exporter-dkcz9                                        0/1     PodInitializing   0             4m42s
gpu-operator-v22-1669053133-node-feature-discovery-master-t4mrp   1/1     Running           0             6m26s
gpu-operator-v22-1669053133-node-feature-discovery-worker-rxxw5   1/1     Running           1 (91s ago)   6m1s
gpu-operator-8488c86579-gf7z8                                     1/1     Running           1 (10m ago)   30m
nvidia-container-toolkit-daemonset-mgn92                          1/1     Running           0             5m59s
nvidia-driver-daemonset-46sdp                                     1/1     Running           0             5m55s
nvidia-cuda-validator-cmt7x                                       0/1     Completed         0             74s
gpu-feature-discovery-4xw2q                                       1/1     Running           0             4m23s
nvidia-device-plugin-daemonset-8czgl                              1/1     Running           0             5m
nvidia-device-plugin-validator-tzpq8                              0/1     Completed         0             37s

Step 5 – Validate and Test

First, check to see the runtimeClass is present:

root@ubuntu:~# kubectl get runtimeclass
NAME     HANDLER   AGE
nvidia   nvidia    30m

kubectl describe node should also list a GPU under the Allocatable resources:

Allocatable:
  cpu:                8
  ephemeral-storage:  49893476109
  hugepages-1Gi:      0
  hugepages-2Mi:      0
  memory:             16384596Ki
  nvidia.com/gpu:     1

We can use the following workload to test. Note the runtimeClassName reference in the Pod spec:

 cat << EOF | kubectl create -f -
apiVersion: v1
kind: Pod
metadata:
  name: cuda-vectoradd
spec:
  restartPolicy: OnFailure
  runtimeClassName: nvidia
  containers:
  - name: cuda-vectoradd
    image: "nvidia/samples:vectoradd-cuda11.2.1"
    resources:
      limits:
         nvidia.com/gpu: 1
EOF

Logs from the Pod will indicate if it was successful:

root@ubuntu:~# kubectl logs cuda-vectoradd
[Vector addition of 50000 elements]
Copy input data from the host memory to the CUDA device
CUDA kernel launch with 196 blocks of 256 threads
Copy output data from the CUDA device to the host memory
Test PASSED

Without providing the runtimeClassName in the spec the Pod will error:

root@ubuntu:~# kubectl logs cuda-vectoradd
[Vector addition of 50000 elements]
Failed to allocate device vector A (error code CUDA driver version is insufficient for CUDA runtime version)!